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  5. Cre17.g727700

Cre17.g727700 (emb1138)


Aliases : emb1138

Description : DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g727700
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00168720 emb1138,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00126p00110160 PMH2, ATRH53,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.03 OrthoFinder output from all 47 species
Adi_g055951 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22353 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Als_g07437 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023578 emb1138 not classified & original description: CDS=239-2545 0.02 OrthoFinder output from all 47 species
Cba_g11616 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g39360 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Gb_04849 emb1138 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Gb_35745 emb1138 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os09g34910.1 PRH75, LOC_Os09g34910 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Len_g12708 emb1138 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10151 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Mp3g17170.1 emb1138 RH3 plastidial RNA basal splicing factor. RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Msp_g01214 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06285 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Pir_g05277 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g43098 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0230.g026421 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Solyc08g042050.3.1 emb1138, Solyc08g042050 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g06691 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.01 OrthoFinder output from all 47 species
Spa_g40629 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g07132 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e011716_P001 emb1138, Zm00001e011716 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e032797_P007 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008252 nucleotidase activity IEP HCCA
MF GO:0008253 5'-nucleotidase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009166 nucleotide catabolic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009264 deoxyribonucleotide catabolic process IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 106 280
IPR001650 Helicase_C 331 430
No external refs found!