Cre17.g721600

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).USP39 snRNP-associated protein

Gene families : OG0005722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005722_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre17.g721600
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00055p00194180	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Ala_g04780	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.02	OrthoFinder output from all 47 species
Aop_g09374	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.03	OrthoFinder output from all 47 species
Cba_g10619	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.02	OrthoFinder output from all 47 species
Ceric.08G005200.1	Ceric.08G005200	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021314.13	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
LOC_Os09g24250.1	LOC_Os09g24250	protein factor (USP39) of U4/U6 U5 small nuclear...	0.03	OrthoFinder output from all 47 species
Mp1g24510.1	No alias	protein factor (USP39) of U4/U6 U5 small nuclear...	0.06	OrthoFinder output from all 47 species
Pir_g14987	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.04	OrthoFinder output from all 47 species
Solyc02g068480.3.1	Solyc02g068480	protein factor (USP39) of U4/U6 U5 small nuclear...	0.02	OrthoFinder output from all 47 species
Tin_g03365	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e013065_P004	Zm00001e013065	protein factor (USP39) of U4/U6 U5 small nuclear...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000339	RNA cap binding	IEP	HCCA
MF	GO:0000340	RNA 7-methylguanosine cap binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	83	405

External Links

No external refs found!

Cre17.g721600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation