Cre17.g719000

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.UAP56 helicase component

Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre17.g719000

Target	Alias	Description	ECC score	Gene Family Method
Adi_g114682	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g07010	No alias	helicase UAP56 & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001376.20	No alias	RNA processing.messenger ribonucleoprotein particle...	0.04	OrthoFinder output from all 47 species
Dcu_g43300	No alias	helicase UAP56 & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01017308001	No alias	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
LOC_Os01g36890.2	LOC_Os01g36890	RNA helicase (Sub2). helicase component UAP56 of...	0.03	OrthoFinder output from all 47 species
Mp1g02350.1	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.03	OrthoFinder output from all 47 species
Pp3c7_5890V3.1	Pp3c7_5890	DEAD/DEAH box RNA helicase family protein	0.01	OrthoFinder output from all 47 species
Solyc06g066060.3.1	Solyc06g066060	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Zm00001e026684_P001	Zm00001e026684	RNA helicase (Sub2). helicase component UAP56 of...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	270	390
IPR011545	DEAD/DEAH_box_helicase_dom	65	230

External Links

No external refs found!