Cre17.g714100 (HTA10)

Aliases : HTA10

Description : Chromatin organisation.histones.H2A-type histone

Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre17.g714100

Target	Alias	Description	ECC score	Gene Family Method
Aev_g40921	HTA6	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g05714	HTA10	histone *(H2A) & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.1Z195500.1	HTA7, Ceric.1Z195500	histone *(H2A) & original description: pacid=50637255...	0.02	OrthoFinder output from all 47 species
Ceric.25G035000.1	HTA7, Ceric.25G035000	histone *(H2A) & original description: pacid=50593123...	0.02	OrthoFinder output from all 47 species
Ore_g05117	HTA6	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g21304	HTA7	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000823	GAMMA-H2AX,...	histone *(H2A) & original description: CDS=1-471	0.02	OrthoFinder output from all 47 species
Solyc09g010400.3.1	HTA12, Solyc09g010400	histone (H2A)	0.01	OrthoFinder output from all 47 species
Spa_g15528	RAT5, HTA1, ATHTA1	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e034815_P001	HTA12, Zm00001e034815	histone (H2A)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	9	88
IPR032454	Histone_H2A_C	91	124

External Links

No external refs found!