Cre16.g680900 (RNA_POL_II_LSRNA_POL_I...)

Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1

Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre16.g680900

Target	Alias	Description	ECC score	Gene Family Method
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.02	OrthoFinder output from all 47 species
Aop_g00820	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.15	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Ehy_g17809	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Ehy_g31167	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.01	OrthoFinder output from all 47 species
Len_g33526	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.01	OrthoFinder output from all 47 species
MA_8544g0010	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.01	OrthoFinder output from all 47 species
Mp4g14340.1	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.02	OrthoFinder output from all 47 species
Ore_g27265	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.01	OrthoFinder output from all 47 species
Pir_g10467	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Spa_g08443	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000684	RNA_pol_II_repeat_euk	1630	1643
IPR000684	RNA_pol_II_repeat_euk	1707	1720
IPR000684	RNA_pol_II_repeat_euk	1616	1629
IPR000684	RNA_pol_II_repeat_euk	1526	1538
IPR000684	RNA_pol_II_repeat_euk	1539	1552
IPR000684	RNA_pol_II_repeat_euk	1567	1580
IPR000684	RNA_pol_II_repeat_euk	1686	1699
IPR000684	RNA_pol_II_repeat_euk	1637	1650
IPR000684	RNA_pol_II_repeat_euk	1581	1594
IPR000684	RNA_pol_II_repeat_euk	1595	1608
IPR000684	RNA_pol_II_repeat_euk	1651	1664
IPR000684	RNA_pol_II_repeat_euk	1700	1713
IPR000684	RNA_pol_II_repeat_euk	1602	1615
IPR000684	RNA_pol_II_repeat_euk	1609	1622
IPR000684	RNA_pol_II_repeat_euk	1560	1573
IPR000684	RNA_pol_II_repeat_euk	1672	1685
IPR000684	RNA_pol_II_repeat_euk	1588	1601
IPR000684	RNA_pol_II_repeat_euk	1658	1671
IPR000684	RNA_pol_II_repeat_euk	1644	1657
IPR000684	RNA_pol_II_repeat_euk	1623	1636
IPR000684	RNA_pol_II_repeat_euk	1574	1587
IPR000684	RNA_pol_II_repeat_euk	1553	1566
IPR007080	RNA_pol_Rpb1_1	15	328
IPR000722	RNA_pol_asu	330	498
IPR007066	RNA_pol_Rpb1_3	501	664
IPR007081	RNA_pol_Rpb1_5	802	1396
IPR007073	RNA_pol_Rpb1_7	1138	1265
IPR007083	RNA_pol_Rpb1_4	690	795
IPR007075	RNA_pol_Rpb1_6	868	1051

External Links

No external refs found!

Cre16.g680900 (RNA_POL_II_LSRNA_POL_I...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation