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  5. Cre16.g679900

Cre16.g679900 (XRN3, AtXRN3)


Aliases : XRN3, AtXRN3

Description : 5-3 exoribonuclease 3 OS=Arabidopsis thaliana


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g679900

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00046450 EIN5, AIN1,... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00024460 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AMTR_s00491p00000370 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G75660 XRN3, AtXRN3 5'-3' exoribonuclease 3 0.01 OrthoFinder output from all 47 species
AT5G42540 XRN2, AtXRN2 exoribonuclease 2 0.03 OrthoFinder output from all 47 species
Aev_g11412 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g15103 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11344 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g68931 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15159.t1 XRN3, AtXRN3,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene67536.t1 XRN3, AtXRN3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67539.t1 XRN3, AtXRN3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15355 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g19860 EIN5, AIN1, XRN4, ATXRN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20393 XRN3, AtXRN3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.07G061100.1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description:... 0.02 OrthoFinder output from all 47 species
GSVIVT01009879001 XRN3, AtXRN3 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
GSVIVT01024465001 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_09607 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os01g65220.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.01 OrthoFinder output from all 47 species
Lfl_g06753 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19229 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g13698 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03252 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g38845 No alias exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g089280.2.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.01 OrthoFinder output from all 47 species
Spa_g09288 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR004859 Xrn1_N 1 253
No external refs found!