LOC_Os05g05860.1


Description : subunit 1 of Pol II RNA polymerase


Gene families : OG_01_0000599 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000599_tree ,
OG_02_0005403 (LandPlants) Phylogenetic Tree(s): OG_02_0005403_tree ,
OG_03_0005891 (SeedPlants) Phylogenetic Tree(s): OG_03_0005891_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g05860.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00152770 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 Archaeplastida
Cpa|evm.model.tig00022075.5 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00022075.6 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01008740001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
GSVIVT01013491001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 Archaeplastida
Gb_03520 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis... 0.02 Archaeplastida
Gb_21425 No alias subunit 1 of Pol V RNA polymerase 0.04 Archaeplastida
Gb_33197 No alias subunit 1 of Pol II RNA polymerase 0.01 Archaeplastida
LOC_Os02g05880.1 No alias subunit 1 of Pol V RNA polymerase 0.01 Archaeplastida
Mp3g15530.1 No alias subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V... 0.02 Archaeplastida
Mp4g14340.1 No alias subunit 1 of Pol II RNA polymerase 0.01 Archaeplastida
Pp3c15_5270V3.1 No alias nuclear RNA polymerase D1B 0.03 Archaeplastida
Pp3c17_4860V3.1 No alias nuclear RNA polymerase C1 0.03 Archaeplastida
Pp3c1_32300V3.1 No alias RNA polymerase II large subunit 0.04 Archaeplastida
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 Archaeplastida
Solyc01g096390.4.1 No alias subunit 1 of Pol V RNA polymerase 0.01 Archaeplastida
Zm00001e007729_P001 No alias subunit 1 of Pol III RNA polymerase 0.03 Archaeplastida
AMTR_s00001p00152770 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 LandPlants
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.01 LandPlants
GSVIVT01008740001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 LandPlants
Pp3c1_32300V3.1 No alias RNA polymerase II large subunit 0.02 LandPlants
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 LandPlants
AMTR_s00001p00152770 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 SeedPlants
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.01 SeedPlants
GSVIVT01008740001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 562 725
IPR000722 RNA_pol_asu 390 558
IPR007080 RNA_pol_Rpb1_1 66 388
IPR007081 RNA_pol_Rpb1_5 863 1453
IPR007073 RNA_pol_Rpb1_7 1198 1332
IPR007075 RNA_pol_Rpb1_6 929 1113
IPR007083 RNA_pol_Rpb1_4 751 856
No external refs found!