LOC_Os05g05230.1


Description : chromatin remodeling factor (Snf2)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0001935 (LandPlants) Phylogenetic Tree(s): OG_02_0001935_tree ,
OG_03_0002288 (SeedPlants) Phylogenetic Tree(s): OG_03_0002288_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g05230.1
Cluster HCCA: Cluster_368

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.05 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.06 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.04 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.04 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.03 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.05 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000545.10 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00000802.67 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.06 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.06 Archaeplastida
Cre16.g647602 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.07 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01017821001 No alias No description available 0.1 Archaeplastida
GSVIVT01017921001 No alias Chromatin organisation.chromatin remodeling... 0.09 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
MA_10436824g0010 No alias No annotation 0.05 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.07 Archaeplastida
Mp1g07380.1 No alias CHD3-type chromatin-remodeling factor CHR7... 0.02 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.05 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.05 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.04 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.06 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.08 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.1 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.09 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.04 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.1 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.09 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.07 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.1 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.12 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 LandPlants
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.06 LandPlants
AT3G06010 ATCHR12 Homeotic gene regulator 0.04 LandPlants
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.02 LandPlants
GSVIVT01017821001 No alias No description available 0.1 LandPlants
GSVIVT01017921001 No alias Chromatin organisation.chromatin remodeling... 0.07 LandPlants
MA_77097g0010 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.02 LandPlants
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.02 LandPlants
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 LandPlants
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.03 LandPlants
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.02 LandPlants
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 LandPlants
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.06 LandPlants
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.1 LandPlants
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.06 LandPlants
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 SeedPlants
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.05 SeedPlants
AT3G06010 ATCHR12 Homeotic gene regulator 0.04 SeedPlants
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.02 SeedPlants
GSVIVT01017821001 No alias No description available 0.08 SeedPlants
GSVIVT01017921001 No alias Chromatin organisation.chromatin remodeling... 0.07 SeedPlants
MA_77097g0010 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.02 SeedPlants
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.02 SeedPlants
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 SeedPlants
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.06 SeedPlants
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.1 SeedPlants
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0042393 histone binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR029295 SnAC 941 1014
IPR001650 Helicase_C 748 861
IPR000330 SNF2_dom 457 729
No external refs found!