AMTR_s00070p00137140 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00070.75

Description : RNA processing.RNA modification.methylthiolation.tRNA methylthiotransferase

Gene families : OG_01_0007273 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007273_tree ,
OG_02_0008755 (LandPlants) Phylogenetic Tree(s): OG_02_0008755_tree ,
OG_03_0010636 (SeedPlants) Phylogenetic Tree(s): OG_03_0010636_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00070p00137140
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
Gb_19405	No alias	tRNA methylthiotransferase	0.04	Archaeplastida
AT1G72090	No alias	Methylthiotransferase	0.02	LandPlants
Gb_19405	No alias	tRNA methylthiotransferase	0.04	LandPlants
AT1G72090	No alias	Methylthiotransferase	0.02	SeedPlants
Gb_19405	No alias	tRNA methylthiotransferase	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	IEA	Interproscan
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEA	Interproscan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013848	Methylthiotransferase_N	49	128
IPR007197	rSAM	188	359

External Links

No external refs found!