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  5. LOC_Os05g02400.1

LOC_Os05g02400.1


Description : no hits & (original description: none)


Gene families : OG_01_0004733 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004733_tree ,
OG_02_0005065 (LandPlants) Phylogenetic Tree(s): OG_02_0005065_tree ,
OG_03_0005356 (SeedPlants) Phylogenetic Tree(s): OG_03_0005356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g02400.1
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AT3G55340 PHIP1 phragmoplastin interacting protein 1 0.12 Archaeplastida
Cre10.g466450 No alias No description available 0.07 Archaeplastida
Mp3g24090.1 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 Archaeplastida
Pp3c14_1940V3.1 No alias phragmoplastin interacting protein 1 0.05 Archaeplastida
Solyc06g018110.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e000171_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e029603_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
AT3G55340 PHIP1 phragmoplastin interacting protein 1 0.1 LandPlants
Mp3g24090.1 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 LandPlants
Pp3c14_1940V3.1 No alias phragmoplastin interacting protein 1 0.04 LandPlants
Solyc06g018110.3.1 No alias no hits & (original description: none) 0.05 LandPlants
Zm00001e000171_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e029603_P002 No alias no hits & (original description: none) 0.03 LandPlants
AT3G55340 PHIP1 phragmoplastin interacting protein 1 0.09 SeedPlants
Solyc06g018110.3.1 No alias no hits & (original description: none) 0.05 SeedPlants
Zm00001e000171_P001 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e029603_P002 No alias no hits & (original description: none) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 365 381
IPR001878 Znf_CCHC 407 424
IPR001878 Znf_CCHC 528 545
IPR001878 Znf_CCHC 467 484
IPR000504 RRM_dom 176 244
IPR000504 RRM_dom 269 337
No external refs found!