1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre12.g538750

Cre12.g538750


Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm1 component


Gene families : OG0003066 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003066_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g538750

Target Alias Description ECC score Gene Family Method Actions
AT1G19120 No alias Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from all 47 species
Adi_g087171 No alias component *(LSm1) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Adi_g087172 No alias component *(LSm1) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Aob_g03242 No alias component *(LSm1) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Azfi_s0054.g033692 No alias component *(LSm1) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.84 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Gb_06915 No alias component LSm1 of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
LOC_Os04g36810.1 LOC_Os04g36810 component LSm1 of U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
Mp4g20900.1 No alias component LSm1 of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007403 No alias component *(LSm1) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Sam_g44243 No alias component *(LSm1) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Zm00001e040952_P001 Zm00001e040952 component LSm1 of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 14 79
No external refs found!