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  5. Cre12.g526750

Cre12.g526750 (Y14)


Aliases : Y14

Description : RNA processing.RNA quality control Exon Junction complex (EJC).core components.Y14 component


Gene families : OG0003013 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g526750
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Adi_g008368 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Adi_g008369 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Adi_g117426 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Als_g23384 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aob_g05683 Y14 component *(Y14) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Aop_g34669 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aspi01Gene25491.t1 Y14, Aspi01Gene25491 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aspi01Gene56405.t1 Y14, Aspi01Gene56405 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030862 Y14 component *(Y14) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Cba_g05693 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021351.15 Y14 RNA processing.RNA quality control Exon Junction complex... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021352.5 Y14 RNA processing.RNA quality control Exon Junction complex... 0.06 OrthoFinder output from all 47 species
GSVIVT01026504001 Y14 RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
LOC_Os05g04850.1 Y14, LOC_Os05g04850 component Y14 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species
Lfl_g01390 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Mp5g04230.1 Y14 component Y14 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Solyc06g065470.4.1 Y14, Solyc06g065470 component Y14 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Tin_g04336 Y14 component *(Y14) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018279 protein N-linked glycosylation via asparagine IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 62 131
No external refs found!