Cre12.g520150

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g520150

Target	Alias	Description	ECC score	Gene Family Method
Adi_g078789	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g10626	EMB3011	RNA helicase *(Prp16) & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.34G064900.1	Ceric.34G064900	not classified & original description: pacid=50623889...	0.02	OrthoFinder output from all 47 species
Cre03.g182950	No alias	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Gb_22388	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	OrthoFinder output from all 47 species
LOC_Os01g11370.1	LOC_Os01g11370	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
LOC_Os06g23530.1	LOC_Os06g23530	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Len_g01369	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Mp4g16380.1	ESP3, EMB2733	RNA helicase (Prp2)	0.02	OrthoFinder output from all 47 species
Msp_g15088	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g16012	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e038305_P001	Zm00001e038305	helicase Prp43 of Intron-Lariat Spliceosome complex	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	241	372
IPR007502	Helicase-assoc_dom	437	557
IPR011545	DEAD/DEAH_box_helicase_dom	22	197
IPR011709	DEAD-box_helicase_OB_fold	722	807

External Links

No external refs found!