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  5. Cre12.g514250

Cre12.g514250


Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g514250

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.02 OrthoFinder output from all 47 species
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.01 OrthoFinder output from all 47 species
Ala_g02655 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68630.t1 PKDM7D, Aspi01Gene68630 histone demethylase *(PKDM7) & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0001.g000131 PKDM7D histone demethylase *(PKDM7) & original description: CDS=166-5457 0.02 OrthoFinder output from all 47 species
Ceric.01G024900.1 Ceric.01G024900 histone demethylase *(KDM5) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.09G000100.1 PKDM7D, Ceric.09G000100 histone demethylase *(PKDM7) & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g14428 PKDM7D histone demethylase *(PKDM7) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.01 OrthoFinder output from all 47 species
GSVIVT01023517001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.01 OrthoFinder output from all 47 species
Gb_27431 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Lfl_g04296 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
MA_9831023g0010 No alias transcription factor (JUMONJI) 0.01 OrthoFinder output from all 47 species
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Msp_g44658 PKDM7D histone demethylase *(PKDM7) & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g38705 No alias histone demethylase *(KDM5) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g15994 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g54999 PKDM7D histone demethylase *(PKDM7) & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013848 No alias histone demethylase *(KDM5) & original description: CDS=319-5874 0.01 OrthoFinder output from all 47 species
Sam_g11634 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g081000.3.1 Solyc08g081000 histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Spa_g17545 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 686 733
IPR001606 ARID_dom 80 166
IPR003349 JmjN 9 42
IPR013637 Lys_sp_deMease-like_dom 1558 1939
IPR004198 Znf_C5HC2 1158 1209
IPR003347 JmjC_dom 898 984
No external refs found!