Cre12.g504200

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS23 component

Gene families : OG0000098 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000098_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g504200
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
Adi_g003649	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Adi_g019024	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Adi_g034183	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 39 species
Adi_g072569	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Adi_g087934	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Adi_g099579	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Aev_g15386	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 39 species
Als_g36811	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Als_g55139	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 39 species
Aop_g30562	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Aop_g43340	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Cba_g62002	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 39 species
Cba_g62012	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Cpa\|evm.model.tig00001264.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 39 species
Dcu_g33588	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Dde_g31745	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 39 species
Msp_g19232	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 39 species
Pir_g58325	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 39 species
Ppi_g48743	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Sam_g08127	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species
Smo145246	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 39 species
Spa_g22052	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 39 species
Spa_g39493	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 39 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	31	141

External Links

No external refs found!

Cre12.g504200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation