Cre12.g490350 (CSB3, CLB4, GCPE, HDS, ISPG)


Aliases : CSB3, CLB4, GCPE, HDS, ISPG

Description : Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase


Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g490350

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00057810 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.03 OrthoFinder output from all 47 species
AT5G60600 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.02 OrthoFinder output from all 47 species
Aop_g14403 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene10125.t1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene35856.t1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.02 OrthoFinder output from all 47 species
Azfi_s0155.g053656 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.04 OrthoFinder output from all 47 species
Cba_g53697 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.01 OrthoFinder output from all 47 species
Dde_g07326 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.01 OrthoFinder output from all 47 species
Gb_01895 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.01 OrthoFinder output from all 47 species
LOC_Os02g39160.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.02 OrthoFinder output from all 47 species
Len_g16087 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Lfl_g05647 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.05 OrthoFinder output from all 47 species
MA_88006g0010 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.02 OrthoFinder output from all 47 species
Mp5g09870.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.09 OrthoFinder output from all 47 species
Nbi_g10591 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.01 OrthoFinder output from all 47 species
Solyc11g069380.2.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0070402 NADPH binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004588 IspG_bac-typ 21 661
No external refs found!