Aliases : CSB3, CLB4, GCPE, HDS, ISPG
Description : Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase
Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00175p00057810 | CSB3, CLB4,... | Secondary metabolism.terpenoids.methylerythritol... | 0.03 | OrthoFinder output from all 47 species | |
AT5G60600 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | 0.02 | OrthoFinder output from all 47 species | |
Aop_g14403 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.01 | OrthoFinder output from all 47 species | |
Aspi01Gene10125.t1 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.01 | OrthoFinder output from all 47 species | |
Aspi01Gene35856.t1 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0155.g053656 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g53697 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.01 | OrthoFinder output from all 47 species | |
Dde_g07326 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.01 | OrthoFinder output from all 47 species | |
Gb_01895 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | 0.01 | OrthoFinder output from all 47 species | |
LOC_Os02g39160.1 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | 0.02 | OrthoFinder output from all 47 species | |
Len_g16087 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g05647 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.05 | OrthoFinder output from all 47 species | |
MA_88006g0010 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | 0.02 | OrthoFinder output from all 47 species | |
Mp5g09870.1 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | 0.09 | OrthoFinder output from all 47 species | |
Nbi_g10591 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... | 0.01 | OrthoFinder output from all 47 species | |
Solyc11g069380.2.1 | CSB3, CLB4,... | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0016114 | terpenoid biosynthetic process | IEA | Interproscan |
MF | GO:0046429 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | IEA | Interproscan |
BP | GO:0055114 | obsolete oxidation-reduction process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004820 | glycine-tRNA ligase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0050661 | NADP binding | IEP | HCCA |
MF | GO:0070402 | NADPH binding | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR004588 | IspG_bac-typ | 21 | 661 |
No external refs found! |