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  5. Cre10.g466250

Cre10.g466250


No description available


Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g466250
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT4G04940 No alias transducin family protein / WD-40 repeat family protein 0.2 OrthoFinder output from all 47 species
Adi_g103599 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Ala_g07767 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Aop_g08279 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037313 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Ceric.19G039200.1 Ceric.19G039200 SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021348.51 No alias No description available 0.08 OrthoFinder output from all 47 species
Dac_g33001 No alias SSU processome assembly factor *(UTP21) & original... 0.01 OrthoFinder output from all 47 species
Dcu_g02020 No alias SSU processome assembly factor *(UTP21) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g18111 No alias SSU processome assembly factor *(UTP21) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01034133001 No alias No description available 0.13 OrthoFinder output from all 47 species
Gb_24979 No alias SSU processome assembly factor (UTP21) 0.05 OrthoFinder output from all 47 species
LOC_Os06g43690.1 LOC_Os06g43690 SSU processome assembly factor (UTP21) 0.16 OrthoFinder output from all 47 species
Lfl_g16684 No alias SSU processome assembly factor *(UTP21) & original... 0.01 OrthoFinder output from all 47 species
Mp3g13780.1 No alias SSU processome assembly factor (UTP21) 0.21 OrthoFinder output from all 47 species
Msp_g32547 No alias SSU processome assembly factor *(UTP21) & original... 0.01 OrthoFinder output from all 47 species
Pnu_g03504 No alias SSU processome assembly factor *(UTP21) & original... 0.01 OrthoFinder output from all 47 species
Smo78691 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc01g087670.3.1 Solyc01g087670 SSU processome assembly factor (UTP21) 0.13 OrthoFinder output from all 47 species
Tin_g11820 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e037473_P002 Zm00001e037473 SSU processome assembly factor (UTP21) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007319 SSU_processome_Utp21 821 1082
IPR001680 WD40_repeat 629 665
No external refs found!