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Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D3 component
Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre10.g455300 | |
| Cluster | HCCA: Cluster_12 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00047670 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G20580 | No alias | Small nuclear ribonucleoprotein family protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g022523 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g038820 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
| Aop_g02312 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene63986.t1 | Aspi01Gene63986 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0373.g067189 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020912.17 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g33659 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01023894001 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g01250.1 | LOC_Os02g01250 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os03g13760.1 | LOC_Os03g13760 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g36954 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g11459 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| MA_9431878g0010 | No alias | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.02 | OrthoFinder output from all 47 species | |
| MA_98884g0010 | No alias | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.01 | OrthoFinder output from all 47 species | |
| Mp1g11210.1 | No alias | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g07432 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
| Nbi_g20365 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g07250 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g08214 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g19522 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g062240.3.1 | Solyc02g062240 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc02g084020.3.1 | Solyc02g084020 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc03g033600.3.1 | Solyc03g033600 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e001000_P001 | Zm00001e001000 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e038613_P001 | Zm00001e038613 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000350 | generation of catalytic spliceosome for second transesterification step | IEP | HCCA |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| BP | GO:0006479 | protein methylation | IEP | HCCA |
| BP | GO:0006480 | N-terminal protein amino acid methylation | IEP | HCCA |
| BP | GO:0006487 | protein N-linked glycosylation | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0008213 | protein alkylation | IEP | HCCA |
| CC | GO:0008250 | oligosaccharyltransferase complex | IEP | HCCA |
| CC | GO:0016272 | prefoldin complex | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
| BP | GO:0031365 | N-terminal protein amino acid modification | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| CC | GO:0140534 | endoplasmic reticulum protein-containing complex | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 14 | 77 |
| No external refs found! |