Cre10.g433550 (ATLIG4, LIG4)

Aliases : ATLIG4, LIG4

Description : DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG4-XRCC4 ligase complex.LIG4 DNA ligase component

Gene families : OG0003019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003019_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre10.g433550

Target	Alias	Description	ECC score	Gene Family Method
Aob_g18389	ATLIG4, LIG4	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene72706.t1	ATLIG4, LIG4,...	EC_6.5 ligase forming phosphoric ester bond & original...	0.01	OrthoFinder output from all 47 species
Len_g47513	ATLIG4, LIG4	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Mp1g17990.1	ATLIG4, LIG4	DNA ligase component LIG4 of LIG4-XRCC4 ligase complex	0.01	OrthoFinder output from all 47 species
Msp_g20544	ATLIG4, LIG4	EC_6.5 ligase forming phosphoric ester bond & original...	0.01	OrthoFinder output from all 47 species
Ppi_g08448	ATLIG4, LIG4	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012308	DNA_ligase_ATP-dep_N	38	243
IPR012310	DNA_ligase_ATP-dep_cent	283	337
IPR012310	DNA_ligase_ATP-dep_cent	384	563
IPR012309	DNA_ligase_ATP-dep_C	587	706

External Links

No external refs found!

Cre10.g433550 (ATLIG4, LIG4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation