LOC_Os04g57670.1


Description : Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana (sp|q9sct2|pp277_arath : 540.0)


Gene families : OG_01_0010988 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010988_tree ,
OG_02_0010944 (LandPlants) Phylogenetic Tree(s): OG_02_0010944_tree ,
OG_03_0010904 (SeedPlants) Phylogenetic Tree(s): OG_03_0010904_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g57670.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Solyc02g090240.4.1 No alias Pentatricopeptide repeat-containing protein At3g50420... 0.08 Archaeplastida
AT3G50420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
MA_98067g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 LandPlants
Solyc02g090240.4.1 No alias Pentatricopeptide repeat-containing protein At3g50420... 0.09 LandPlants
AT3G50420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
MA_98067g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 SeedPlants
Solyc02g090240.4.1 No alias Pentatricopeptide repeat-containing protein At3g50420... 0.14 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 160 183
IPR002885 Pentatricopeptide_repeat 188 217
IPR002885 Pentatricopeptide_repeat 567 588
IPR002885 Pentatricopeptide_repeat 396 424
IPR002885 Pentatricopeptide_repeat 262 284
IPR002885 Pentatricopeptide_repeat 493 541
No external refs found!