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Description : Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum
Gene families : OG0002889 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002889_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre09.g407200 | |
| Cluster | HCCA: Cluster_33 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00187330 | evm_27.TU.AmTr_v1... | Prolycopene isomerase, chloroplastic OS=Daucus carota | 0.03 | OrthoFinder output from all 47 species | |
| AT1G57770 | No alias | FAD/NAD(P)-binding oxidoreductase family protein | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g49491 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g06469 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g07926 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g33225 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene67250.t1 | Aspi01Gene67250 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g27219 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001258.10 | No alias | No description available | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020723.8 | No alias | No description available | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g23383 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g10069 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g14193 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dde_g23170 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g15650 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01023233001 | No alias | Prolycopene isomerase, chloroplastic OS=Daucus carota | 0.06 | OrthoFinder output from all 47 species | |
| Gb_39487 | No alias | Prolycopene isomerase, chloroplastic OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g62510.1 | LOC_Os03g62510 | Prolycopene isomerase, chloroplastic OS=Daucus carota... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g03122 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g05426 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10428345g0020 | No alias | Prolycopene isomerase, chloroplastic OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10428660g0010 | No alias | Prolycopene isomerase 1, chloroplastic OS=Oncidium... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g12820 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g10834 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g62907 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0052.g014061 | No alias | not classified & original description: CDS=115-1746 | 0.02 | OrthoFinder output from all 47 species | |
| Smo229587 | No alias | Prolycopene isomerase 1, chloroplastic OS=Oncidium... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g010180.4.1 | Solyc05g010180 | Prolycopene isomerase, chloroplastic OS=Daucus carota... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g10638 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g12165 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g23774 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e011669_P002 | Zm00001e011669 | Prolycopene isomerase, chloroplastic OS=Daucus carota... | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | HCCA |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | HCCA |
| BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
| MF | GO:0051213 | dioxygenase activity | IEP | HCCA |
| BP | GO:0055085 | transmembrane transport | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |