Cre09.g403219 (NRPD5, ATRPABC24.3,...)

Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 5

Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre09.g403219

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0001.g000852	NRPD5,...	component *(NRPE5) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0109.g045433	NRPD5,...	not classified & original description: CDS=263-967	0.02	OrthoFinder output from all 47 species
Ceric.04G047400.1	NRPD5,...	component *(NRPE5) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021582.9	NRPD5,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.06	OrthoFinder output from all 47 species
Dcu_g15170	NRPD5,...	component *(NRPE5) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Nbi_g10774	NRPD5,...	component *(NRPE5) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Pp3c10_21990V3.1	NRPD5,...	Eukaryotic rpb5 RNA polymerase subunit family protein	0.03	OrthoFinder output from all 47 species
Ppi_g28025	NRPD5,...	component *(NRPE5) of RNA polymerase V complex &...	0.01	OrthoFinder output from all 47 species
Solyc05g051790.3.1	NRPD5,...	subunit 5 of RNA polymerase	0.01	OrthoFinder output from all 47 species
Spa_g00199	NRPD5,...	component *(NRPE5) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e007759_P002	NRPD5,...	subunit 5 of RNA polymerase	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003883	CTP synthase activity	IEP	HCCA
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005571	RNA_pol_Rpb5_N	3	86
IPR000783	RNA_pol_subH/Rpb5_C	129	201

External Links

No external refs found!

Cre09.g403219 (NRPD5, ATRPABC24.3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation