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  5. Cre09.g401300

Cre09.g401300


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1C snRNP component


Gene families : OG0002867 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g401300

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00133180 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Adi_g007520 No alias component *(U1C) of U1 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g12591 No alias component *(U1C) of U1 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0094.g043500 No alias component *(U1C) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Ceric.09G042200.1 Ceric.09G042200 component *(U1C) of U1 snRNP complex & original... 0.06 OrthoFinder output from all 47 species
Ceric.09G046300.1 Ceric.09G046300 component *(U1C) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01011011001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Gb_41077 No alias component U1C of U1 small nuclear ribonucleoprotein... 0.06 OrthoFinder output from all 47 species
LOC_Os02g16640.1 LOC_Os02g16640 component U1C of U1 small nuclear ribonucleoprotein... 0.01 OrthoFinder output from all 47 species
MA_27014g0010 No alias component U1C of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Mp4g05150.1 No alias component U1C of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species
Ore_g06327 No alias component *(U1C) of U1 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02748 No alias component *(U1C) of U1 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species
Solyc01g067830.3.1 Solyc01g067830 component U1C of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Solyc06g008860.3.1 Solyc06g008860 component U1C of U1 small nuclear ribonucleoprotein... 0.11 OrthoFinder output from all 47 species
Spa_g29133 No alias component *(U1C) of U1 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21443 No alias component *(U1C) of U1 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
InterPro domains Description Start Stop
IPR013085 U1-CZ_Znf_C2H2 1 38
No external refs found!