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  5. Cre09.g398650

Cre09.g398650


Description : Cactin OS=Arabidopsis thaliana


Gene families : OG0007043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g398650

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00051p00095080 evm_27.TU.AmTr_v1... Cactin OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G03910 No alias EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13... 0.03 OrthoFinder output from all 47 species
Ala_g14952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13386 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g16645 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G082000.1 Ceric.14G082000 not classified & original description: pacid=50634889... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.13 No alias Cactin OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g32754 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033725001 No alias Cactin OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g58590.1 LOC_Os03g58590 Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 644.0) 0.04 OrthoFinder output from all 47 species
MA_10425940g0010 No alias Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 378.0) 0.02 OrthoFinder output from all 47 species
Mp1g18180.1 No alias Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 645.0) 0.03 OrthoFinder output from all 47 species
Pir_g05927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo107633 No alias Cactin OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc10g085410.3.1 Solyc10g085410 Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 696.0) 0.04 OrthoFinder output from all 47 species
Spa_g07915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006029_P001 Zm00001e006029 Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 708.0) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR019134 Cactin_C 671 797
IPR018816 Cactin_central 136 360
No external refs found!