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  5. Cre08.g358538

Cre08.g358538 (LYC)


Aliases : LYC

Description : Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase


Gene families : OG0004073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre08.g358538
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00097p00060630 LYC,... Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
AT3G10230 LYC lycopene cyclase 0.05 OrthoFinder output from all 47 species
Adi_g085862 LYC EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12976 LYC EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0182.g056455 LYC EC_5.5 intramolecular lyase & original description: CDS=1-1671 0.04 OrthoFinder output from all 47 species
Ehy_g06810 LYC EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10064 LYC EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g29048 LYC EC_5.5 intramolecular lyase & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g14458 No alias EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Smo266613 LYC Secondary metabolism.terpenoids.terpenoid... 0.04 OrthoFinder output from all 47 species
Solyc04g040190.1.1 LYC, Solyc04g040190 lycopene beta cyclase (LCY-b) 0.05 OrthoFinder output from all 47 species
Zm00001e013933_P001 LYC, Zm00001e013933 lycopene beta cyclase (LCY-b) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!