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  5. Cre07.g352251

Cre07.g352251 (FAS4, ATFAS4)


Aliases : FAS4, ATFAS4

Description : ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana


Gene families : OG0005211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005211_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g352251
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00092980 FAS4, ATFAS4,... ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G33390 FAS4, ATFAS4 RNA helicase family protein 0.07 OrthoFinder output from all 47 species
Aob_g19960 FAS4, ATFAS4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G059400.1 FAS4, ATFAS4,... not classified & original description: pacid=50588370... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000113.111 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01028054001 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os02g50370.1 FAS4, ATFAS4,... ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp4g04560.1 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013416 FAS4, ATFAS4 not classified & original description: CDS=131-4258 0.02 OrthoFinder output from all 47 species
Solyc01g095710.3.1 FAS4, ATFAS4,... ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g10332 FAS4, ATFAS4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015757_P002 FAS4, ATFAS4,... ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 1269 1361
IPR007502 Helicase-assoc_dom 903 1089
IPR001650 Helicase_C 752 839
No external refs found!