LOC_Os04g54510.1

Description : transcription factor (mTERF)

Gene families : OG_01_0000097 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000097_tree ,
OG_02_0000048 (LandPlants) Phylogenetic Tree(s): OG_02_0000048_tree ,
OG_03_0000021 (SeedPlants) Phylogenetic Tree(s): OG_03_0000021_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g54510.1
Cluster	HCCA: Cluster_179

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.05	Archaeplastida
AMTR_s00010p00255890	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.07	Archaeplastida
GSVIVT01028380001	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
Gb_06120	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.03	Archaeplastida
Gb_26175	No alias	transcription factor (mTERF)	0.04	Archaeplastida
MA_10426325g0010	No alias	transcription factor (mTERF)	0.06	Archaeplastida
MA_192398g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_493420g0010	No alias	transcription factor (mTERF)	0.06	Archaeplastida
MA_7539255g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_81581g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_92135g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Smo77318	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
Solyc02g067960.3.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Solyc04g011700.2.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Solyc04g051880.3.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Solyc04g072500.1.1	No alias	transcription factor (mTERF)	0.06	Archaeplastida
Solyc04g072540.3.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Zm00001e010589_P001	No alias	transcription factor (mTERF)	0.06	Archaeplastida
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Zm00001e022322_P001	No alias	transcription factor (mTERF)	0.05	Archaeplastida
Zm00001e027097_P001	No alias	transcription factor (mTERF)	0.03	Archaeplastida
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
MA_10426325g0010	No alias	transcription factor (mTERF)	0.06	LandPlants
Zm00001e010589_P001	No alias	transcription factor (mTERF)	0.03	LandPlants
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.03	LandPlants
Zm00001e022322_P001	No alias	transcription factor (mTERF)	0.02	LandPlants
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
MA_10426325g0010	No alias	transcription factor (mTERF)	0.06	SeedPlants
Solyc04g011700.2.1	No alias	transcription factor (mTERF)	0.01	SeedPlants
Zm00001e010589_P001	No alias	transcription factor (mTERF)	0.03	SeedPlants
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003690	MTERF	88	216
IPR003690	MTERF	267	362

External Links

No external refs found!

LOC_Os04g54510.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation