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  5. Cre06.g281050

Cre06.g281050 (SNX1, ATSNX1)


Aliases : SNX1, ATSNX1

Description : Vesicle trafficking.endomembrane trafficking.protein recycling.Retromer protein recycling complex.SNX1 component


Gene families : OG0003446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g281050
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Aob_g05057 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.01 OrthoFinder output from all 47 species
Azfi_s0151.g053345 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.02 OrthoFinder output from all 47 species
Cba_g04481 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Spa_g00713 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.02 OrthoFinder output from all 47 species
Spa_g08198 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.02 OrthoFinder output from all 47 species
Zm00001e019193_P002 SNX1, ATSNX1,... component SNX1 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
InterPro domains Description Start Stop
IPR001683 PX_dom 29 140
IPR015404 Vps5_C 175 383
No external refs found!