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  5. Cre06.g278239

Cre06.g278239 (SR30, ATSRP30, At-SR30)


Aliases : SR30, ATSRP30, At-SR30

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SR30/34 splicing factor


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g278239
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
AT4G02430 SR34b, At-SR34b RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
Adi_g056476 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g112402 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g33880 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g52939 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g05960 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g29970 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G062100.1 SR30, ATSRP30,... RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.23G039200.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000857.20 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dac_g02742 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g12144 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g36549 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g08553 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g39694 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01027997001 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
GSVIVT01038636001 At-SR34a, SR34a, SRp34a RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Gb_21062 At-SR34a, SR34a, SRp34a no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os01g21420.1 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g22380.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g47630.1 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Len_g20957 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
MA_11621g0010 At-SR34a, SR34a, SRp34a SR30/34 RNA splicing factor 0.01 OrthoFinder output from all 47 species
Msp_g27451 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09836 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g31228 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02953 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29717 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g18787 No alias RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.06 OrthoFinder output from all 47 species
Spa_g04177 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17256 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17257 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05849 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19153 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 135 198
IPR000504 RRM_dom 37 103
No external refs found!