LOC_Os04g52290.1


Description : Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana (sp|q9sak0|pp132_arath : 840.0)


Gene families : OG_01_0009368 (Archaeplastida) Phylogenetic Tree(s): OG_01_0009368_tree ,
OG_02_0009342 (LandPlants) Phylogenetic Tree(s): OG_02_0009342_tree ,
OG_03_0010461 (SeedPlants) Phylogenetic Tree(s): OG_03_0010461_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52290.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00136310 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g79490,... 0.04 Archaeplastida
AT1G79490 EMB2217 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
MA_77201g0010 No alias Pentatricopeptide repeat-containing protein At1g79490,... 0.02 Archaeplastida
Zm00001e006963_P001 No alias Pentatricopeptide repeat-containing protein At1g79490,... 0.04 Archaeplastida
AMTR_s00032p00136310 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g79490,... 0.04 LandPlants
AT1G79490 EMB2217 Pentatricopeptide repeat (PPR) superfamily protein 0.06 LandPlants
MA_77201g0010 No alias Pentatricopeptide repeat-containing protein At1g79490,... 0.02 LandPlants
Zm00001e006963_P001 No alias Pentatricopeptide repeat-containing protein At1g79490,... 0.04 LandPlants
AMTR_s00032p00136310 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g79490,... 0.03 SeedPlants
AT1G79490 EMB2217 Pentatricopeptide repeat (PPR) superfamily protein 0.05 SeedPlants
MA_77201g0010 No alias Pentatricopeptide repeat-containing protein At1g79490,... 0.02 SeedPlants
Zm00001e006963_P001 No alias Pentatricopeptide repeat-containing protein At1g79490,... 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 299 327
IPR002885 Pentatricopeptide_repeat 191 220
IPR002885 Pentatricopeptide_repeat 336 362
IPR002885 Pentatricopeptide_repeat 225 271
IPR033443 PPR_long 382 488
No external refs found!