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  5. Cre05.g247000

Cre05.g247000


No description available


Gene families : OG0003668 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre05.g247000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00137760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.01 OrthoFinder output from all 47 species
AT5G12400 No alias DNA binding;zinc ion binding;DNA binding 0.05 OrthoFinder output from all 47 species
AT5G22760 No alias PHD finger family protein 0.02 OrthoFinder output from all 47 species
AT5G35210 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.03 OrthoFinder output from all 47 species
Adi_g107345 No alias PHD finger transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g10447 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g29357 No alias PHD finger transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g18326 No alias PHD finger transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene10763.t1 Aspi01Gene10763 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36310.t1 Aspi01Gene36310 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene36311.t1 Aspi01Gene36311 PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0087.g042229 No alias PHD finger transcription factor & original description:... 0.01 OrthoFinder output from all 47 species
Cba_g75389 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.29G051900.1 Ceric.29G051900 PHD finger transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g04154 No alias PHD finger transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g17420 No alias PHD finger transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01037231001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
LOC_Os11g05130.1 LOC_Os11g05130 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g05757 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10689g0010 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Mp4g03480.1 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Ore_g38137 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09830 No alias PHD finger transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Smo441144 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 OrthoFinder output from all 47 species
Solyc11g065160.3.1 Solyc11g065160 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc11g066780.3.1 Solyc11g066780 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Tin_g20510 No alias PHD finger transcription factor & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR018501 DDT_dom 215 267
IPR019787 Znf_PHD-finger 784 826
IPR001487 Bromodomain 2279 2359
IPR001487 Bromodomain 2497 2575
IPR001487 Bromodomain 2785 2867
No external refs found!