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  5. Cre05.g241300

Cre05.g241300


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-F component


Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre05.g241300

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00226370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
AT2G14285 No alias Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
AT2G43810 No alias Small nuclear ribonucleoprotein family protein 0.05 OrthoFinder output from all 47 species
AT3G59810 No alias Small nuclear ribonucleoprotein family protein 0.06 OrthoFinder output from all 47 species
AT4G30220 RUXF small nuclear ribonucleoprotein F 0.06 OrthoFinder output from all 47 species
Adi_g019037 No alias component *(LSm6) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Adi_g129920 No alias component *(LSm6) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Als_g63045 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Ceric.1Z177500.1 Ceric.1Z177500 component *(LSm6) of U6-associated LSm accessory... 0.07 OrthoFinder output from all 47 species
Ceric.27G002400.1 RUXF, Ceric.27G002400 component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Ceric.36G038500.1 RUXF, Ceric.36G038500 component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.19 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001355.5 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.07 OrthoFinder output from all 47 species
LOC_Os02g08090.1 LOC_Os02g08090 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
LOC_Os04g31950.1 LOC_Os04g31950 component LSm6 of U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
LOC_Os11g43620.1 LOC_Os11g43620 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
MA_20554g0010 No alias component LSm6 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
MA_26016g0010 RUXF component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Mp5g02830.1 No alias component LSm6 of U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
Mp6g01610.1 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species
Pir_g59637 No alias component *(LSm6) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Pir_g63193 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Pp3c12_17630V3.1 RUXF, Pp3c12_17630 small nuclear ribonucleoprotein F 0.03 OrthoFinder output from all 47 species
Pp3c22_1090V3.1 Pp3c22_1090 Small nuclear ribonucleoprotein family protein 0.04 OrthoFinder output from all 47 species
Pp3c4_14270V3.1 RUXF, Pp3c4_14270 small nuclear ribonucleoprotein F 0.02 OrthoFinder output from all 47 species
Smo228181 RUXF RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Smo268399 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.06 OrthoFinder output from all 47 species
Solyc10g078450.2.1 Solyc10g078450 component LSm6 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Zm00001e025108_P001 RUXF, Zm00001e025108 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0030150 protein import into mitochondrial matrix IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 12 74
No external refs found!