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  5. Cre04.g227750

Cre04.g227750 (COM1, GR1, ATGR1, ATCOM1)


Aliases : COM1, GR1, ATGR1, ATCOM1

Description : DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).auxiliary protein (COM1)


Gene families : OG0009497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009497_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g227750

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00213820 COM1, GR1,... DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
AT3G52115 COM1, GR1, ATGR1, ATCOM1 gamma response gene 1 0.02 OrthoFinder output from all 47 species
Gb_33421 COM1, GR1, ATGR1, ATCOM1 ssDNA endonuclease (COM1/SAE2). homologous recombination... 0.02 OrthoFinder output from all 47 species
Smo420691 COM1, GR1, ATGR1, ATCOM1 DNA damage response.DNA repair mechanisms.homologous... 0.01 OrthoFinder output from all 47 species
Solyc01g086930.4.1 COM1, GR1,... ssDNA endonuclease (COM1/SAE2). homologous recombination... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013882 Ctp1_C 1684 1806
No external refs found!