Cre04.g223850 (RH8, ATRH8)

Aliases : RH8, ATRH8

Description : DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica

Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre04.g223850
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00258110	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
AT2G45810	No alias	DEA(D/H)-box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Adi_g012833	RH8, ATRH8	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g075137	RH8, ATRH8	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os04g45040.3	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Lfl_g03846	No alias	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g24921	No alias	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.01	OrthoFinder output from all 47 species
Solyc01g094350.4.1	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e004416_P001	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Zm00001e012585_P001	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Zm00001e015237_P002	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	56	219
IPR001650	Helicase_C	257	363

External Links

No external refs found!