LOC_Os04g50990.1

Description : component RPL12 of LSU proteome component

Gene families : OG_01_0002167 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002167_tree ,
OG_02_0002069 (LandPlants) Phylogenetic Tree(s): OG_02_0002069_tree ,
OG_03_0002451 (SeedPlants) Phylogenetic Tree(s): OG_03_0002451_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g50990.1
Cluster	HCCA: Cluster_379

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	Archaeplastida
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	Archaeplastida
AT2G37190	No alias	Ribosomal protein L11 family protein	0.51	Archaeplastida
AT3G53430	No alias	Ribosomal protein L11 family protein	0.18	Archaeplastida
AT5G60670	No alias	Ribosomal protein L11 family protein	0.31	Archaeplastida
Cpa\|evm.model.tig00001339.27	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.33	Archaeplastida
Cre12.g528750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.33	Archaeplastida
GSVIVT01016274001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
GSVIVT01025189001	No alias	No description available	0.28	Archaeplastida
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.38	Archaeplastida
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.43	Archaeplastida
Pp3c15_14410V3.1	No alias	Ribosomal protein L11 family protein	0.4	Archaeplastida
Pp3c16_2860V3.1	No alias	Ribosomal protein L11 family protein	0.3	Archaeplastida
Pp3c27_660V3.1	No alias	Ribosomal protein L11 family protein	0.34	Archaeplastida
Pp3c6_19290V3.1	No alias	Ribosomal protein L11 family protein	0.24	Archaeplastida
Pp3c9_15380V3.1	No alias	Ribosomal protein L11 family protein	0.35	Archaeplastida
Smo227409	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	Archaeplastida
Solyc06g075180.1.1	No alias	component RPL12 of LSU proteome component	0.19	Archaeplastida
Solyc11g065670.1.1	No alias	component RPL12 of LSU proteome component	0.34	Archaeplastida
Solyc11g069440.1.1	No alias	component RPL12 of LSU proteome component	0.43	Archaeplastida
Zm00001e007067_P001	No alias	component RPL12 of LSU proteome component	0.16	Archaeplastida
Zm00001e008316_P001	No alias	component RPL12 of LSU proteome component	0.14	Archaeplastida
Zm00001e023297_P001	No alias	component RPL12 of LSU proteome component	0.21	Archaeplastida
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	LandPlants
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	LandPlants
AT2G37190	No alias	Ribosomal protein L11 family protein	0.48	LandPlants
AT3G53430	No alias	Ribosomal protein L11 family protein	0.17	LandPlants
AT5G60670	No alias	Ribosomal protein L11 family protein	0.3	LandPlants
GSVIVT01016274001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	LandPlants
GSVIVT01025189001	No alias	No description available	0.24	LandPlants
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	LandPlants
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.35	LandPlants
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.41	LandPlants
Pp3c15_14410V3.1	No alias	Ribosomal protein L11 family protein	0.36	LandPlants
Pp3c16_2860V3.1	No alias	Ribosomal protein L11 family protein	0.27	LandPlants
Pp3c27_660V3.1	No alias	Ribosomal protein L11 family protein	0.33	LandPlants
Pp3c27_820V3.1	No alias	Ribosomal protein L11 family protein	0.01	LandPlants
Pp3c6_19290V3.1	No alias	Ribosomal protein L11 family protein	0.23	LandPlants
Pp3c9_15380V3.1	No alias	Ribosomal protein L11 family protein	0.33	LandPlants
Smo227409	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	LandPlants
Solyc06g075180.1.1	No alias	component RPL12 of LSU proteome component	0.19	LandPlants
Solyc11g065670.1.1	No alias	component RPL12 of LSU proteome component	0.34	LandPlants
Solyc11g069440.1.1	No alias	component RPL12 of LSU proteome component	0.41	LandPlants
Zm00001e007067_P001	No alias	component RPL12 of LSU proteome component	0.16	LandPlants
Zm00001e008316_P001	No alias	component RPL12 of LSU proteome component	0.14	LandPlants
Zm00001e023297_P001	No alias	component RPL12 of LSU proteome component	0.2	LandPlants
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	SeedPlants
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	SeedPlants
AT2G37190	No alias	Ribosomal protein L11 family protein	0.48	SeedPlants
AT3G53430	No alias	Ribosomal protein L11 family protein	0.17	SeedPlants
AT5G60670	No alias	Ribosomal protein L11 family protein	0.3	SeedPlants
GSVIVT01016274001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	SeedPlants
GSVIVT01025189001	No alias	No description available	0.24	SeedPlants
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	SeedPlants
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.35	SeedPlants
Solyc06g075180.1.1	No alias	component RPL12 of LSU proteome component	0.17	SeedPlants
Solyc11g065670.1.1	No alias	component RPL12 of LSU proteome component	0.29	SeedPlants
Solyc11g069440.1.1	No alias	component RPL12 of LSU proteome component	0.38	SeedPlants
Zm00001e007067_P001	No alias	component RPL12 of LSU proteome component	0.16	SeedPlants
Zm00001e008316_P001	No alias	component RPL12 of LSU proteome component	0.14	SeedPlants
Zm00001e023297_P001	No alias	component RPL12 of LSU proteome component	0.18	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR020784	Ribosomal_L11_N	13	70
IPR020783	Ribosomal_L11_C	75	144

External Links

No external refs found!

LOC_Os04g50990.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation