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  5. Cre03.g204950

Cre03.g204950


No description available


Gene families : OG0001433 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001433_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cre03.g204950

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00217580 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
Adi_g017411 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Adi_g087326 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Adi_g115525 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Ala_g16232 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aop_g14212 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aspi01Gene69547.t1 Aspi01Gene69547 component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Dac_g10594 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Dcu_g39092 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ehy_g12307 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Ehy_g19978 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Gb_05925 No alias component ACINUS of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Lfl_g34375 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Mp2g15000.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Pir_g04495 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012620 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Sam_g10871 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Spa_g08782 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Tin_g27542 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Zm00001e037964_P002 Zm00001e037964 component ACINUS of RNA quality control Exon Junction complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 477 526
IPR032552 RSB_motif 644 696
IPR003034 SAP_dom 9 41
No external refs found!