LOC_Os04g50660.1


Description : SSU processome assembly factor (TOZ)


Gene families : OG_01_0003962 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003962_tree ,
OG_02_0005807 (LandPlants) Phylogenetic Tree(s): OG_02_0005807_tree ,
OG_03_0006787 (SeedPlants) Phylogenetic Tree(s): OG_03_0006787_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g50660.1
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00053570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.2 Archaeplastida
Cpa|evm.model.tig00000704.61 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
Cpa|evm.model.tig00000704.62 No alias No description available 0.02 Archaeplastida
Cre07.g344050 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
GSVIVT01024351001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.1 Archaeplastida
MA_10426255g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10601g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10601g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_566936g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.13 Archaeplastida
Pp3c19_12460V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.18 Archaeplastida
Smo80645 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.16 Archaeplastida
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.08 Archaeplastida
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.18 Archaeplastida
AMTR_s00048p00053570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 LandPlants
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.19 LandPlants
GSVIVT01024351001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 LandPlants
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.09 LandPlants
MA_10426255g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_566936g0010 No alias no hits & (original description: none) 0.05 LandPlants
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.11 LandPlants
Pp3c19_12460V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.17 LandPlants
Smo80645 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 LandPlants
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.14 LandPlants
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.08 LandPlants
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.17 LandPlants
AMTR_s00048p00053570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 SeedPlants
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.18 SeedPlants
GSVIVT01024351001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 SeedPlants
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.09 SeedPlants
MA_10426255g0010 No alias no hits & (original description: none) 0.02 SeedPlants
MA_566936g0010 No alias no hits & (original description: none) 0.04 SeedPlants
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.13 SeedPlants
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.08 SeedPlants
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.17 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 400 440
IPR001680 WD40_repeat 196 233
IPR001680 WD40_repeat 445 483
IPR001680 WD40_repeat 504 535
IPR001680 WD40_repeat 153 191
IPR001680 WD40_repeat 110 147
IPR001680 WD40_repeat 544 576
IPR001680 WD40_repeat 581 618
IPR001680 WD40_repeat 79 105
IPR013934 SSU_processome_Utp13 683 816
No external refs found!