Cre03.g199647 (EIF4A-III)

Aliases : EIF4A-III

Description : RNA processing.RNA quality control Exon Junction complex (EJC).core components.eIF4A3 helicase component

Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g199647
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00181640	EIF4A-2,...	Protein biosynthesis.translation initiation.mRNA...	0.02	OrthoFinder output from all 47 species
AMTR_s00068p00116790	EIF4A-2,...	Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum	0.01	OrthoFinder output from all 47 species
AT3G19760	EIF4A-III	eukaryotic initiation factor 4A-III	0.01	OrthoFinder output from all 47 species
Adi_g022927	EIF4A-III	helicase component *(eIF4A3) of RNA quality control Exon...	0.02	OrthoFinder output from all 47 species
Adi_g114925	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g10607	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g39136	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14573	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17749.t1	EIF4A-2, Aspi01Gene17749	mRNA unwinding factor *(eIF4A)) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0010.g012425	No alias	not classified & original description: CDS=200-1144	0.02	OrthoFinder output from all 47 species
Cba_g51199	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g10266	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g37300	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g03950	EIF4A-III	helicase component *(eIF4A3) of RNA quality control Exon...	0.02	OrthoFinder output from all 47 species
Lfl_g04610	No alias	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g23612	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.01	OrthoFinder output from all 47 species
Mp4g09540.1	EIF4A-III	helicase component eIF4A3 of RNA quality control Exon...	0.04	OrthoFinder output from all 47 species
Msp_g08580	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g10223	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14903	EIF4A-III	helicase component *(eIF4A3) of RNA quality control Exon...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002703	No alias	not classified & original description: CDS=1-279	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0278.g027081	EIF4A-III	not classified & original description: CDS=108-1172	0.03	OrthoFinder output from all 47 species
Sam_g48579	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Smo143895	EIF4A-2	Protein biosynthesis.translation initiation.mRNA...	0.02	OrthoFinder output from all 47 species
Smo85554	EIF4A-2	Protein biosynthesis.translation initiation.mRNA...	0.01	OrthoFinder output from all 47 species
Solyc06g062800.4.1	EIF4A-2, Solyc06g062800	mRNA unwinding factor (eIF4A)	0.01	OrthoFinder output from all 47 species
Solyc11g033280.2.1	EIF4A-III, Solyc11g033280	helicase component eIF4A3 of RNA quality control Exon...	0.03	OrthoFinder output from all 47 species
Spa_g20030	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g27327	EIF4A-2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g03932	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g12485	EIF4A-III	helicase component *(eIF4A3) of RNA quality control Exon...	0.01	OrthoFinder output from all 47 species
Zm00001e016284_P001	EIF4A-III, Zm00001e016284	helicase component eIF4A3 of RNA quality control Exon...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0035145	exon-exon junction complex	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	252	360
IPR011545	DEAD/DEAH_box_helicase_dom	51	213

External Links

No external refs found!

Cre03.g199647 (EIF4A-III)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation