Cre03.g180800 (SNL4)

Aliases : SNL4

Description : Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g180800
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
AT1G10450	SNL6	SIN3-like 6	0.02	OrthoFinder output from all 47 species
AT1G24190	SNL3, ATSIN3, SIN3	SIN3-like 3	0.02	OrthoFinder output from all 47 species
AT1G27240	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.02	OrthoFinder output from all 47 species
AT1G70060	SNL4	SIN3-like 4	0.02	OrthoFinder output from all 47 species
Adi_g013447	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.01	OrthoFinder output from all 47 species
Adi_g058426	SNL4	component *(SNL) of histone deacetylase machineries &...	0.01	OrthoFinder output from all 47 species
Adi_g066433	SNL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g074703	SNL3, ATSIN3, SIN3	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g088432	SNL3, ATSIN3, SIN3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g21851	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ala_g17667	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ala_g21578	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Als_g05403	SNL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g29157	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Azfi_s0048.g030537	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ceric.31G072300.1	SNL4, Ceric.31G072300	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001155.28	SNL3, ATSIN3, SIN3	Paired amphipathic helix protein Sin3-like 1...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021234.23	SNL5	Paired amphipathic helix protein Sin3-like 3...	0.03	OrthoFinder output from all 47 species
Dac_g01796	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ehy_g10035	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.01	OrthoFinder output from all 47 species
GSVIVT01020136001	SNL3, ATSIN3, SIN3	Chromatin organisation.histone modifications.histone...	0.02	OrthoFinder output from all 47 species
GSVIVT01032579001	SNL2	Chromatin organisation.histone modifications.histone...	0.02	OrthoFinder output from all 47 species
Gb_11760	SNL3, ATSIN3, SIN3	component SNL of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species
Gb_35988	SNL4	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
LOC_Os01g01960.1	SNL3, ATSIN3,...	component SNL of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
Len_g04844	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Len_g58076	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Lfl_g03500	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Lfl_g03517	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Mp7g11300.1	SNL5	Paired amphipathic helix protein Sin3-like 2...	0.02	OrthoFinder output from all 47 species
Msp_g06593	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Nbi_g03860	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Nbi_g09686	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.01	OrthoFinder output from all 47 species
Ore_g35781	SNL4	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g13056	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ppi_g09115	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Sam_g14557	No alias	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Sam_g25571	No alias	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Sam_g29972	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo440352	SNL4	Chromatin organisation.histone modifications.histone...	0.02	OrthoFinder output from all 47 species
Solyc02g067570.3.1	SNL2, Solyc02g067570	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Solyc02g087360.4.1	SNL2, Solyc02g087360	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Solyc05g006540.3.1	SNL3, ATSIN3,...	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Spa_g02528	SNL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g15712	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Spa_g44186	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g56389	SNL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g13041	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Tin_g19320	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Zm00001e017111_P002	SNL4, Zm00001e017111	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003822	PAH	149	192
IPR003822	PAH	58	102
IPR003822	PAH	294	336
IPR013194	HDAC_interact_dom	388	482
IPR031693	Sin3_C	865	1135

External Links

No external refs found!

Cre03.g180800 (SNL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation