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  5. Cre03.g171650

Cre03.g171650


Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g171650
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00237040 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g021909 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g01587 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g33749 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.06G015600.1 Ceric.06G015600 not classified & original description: pacid=50620151... 0.01 OrthoFinder output from all 47 species
Ceric.1Z321000.1 Ceric.1Z321000 not classified & original description: pacid=50597147... 0.01 OrthoFinder output from all 47 species
Dac_g22791 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g16672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03968 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g02884.1 LOC_Os01g02884 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os03g53760.1 LOC_Os03g53760 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.01 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g18805 No alias Trihelix-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
MA_10425930g0020 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10437209g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
MA_22839g0010 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.03 OrthoFinder output from all 47 species
MA_97917g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g43492 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g06502 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014244 No alias not classified & original description: CDS=5030-5773 0.02 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g26916 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g47124 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 638 793
IPR007502 Helicase-assoc_dom 1101 1190
IPR011709 DEAD-box_helicase_OB_fold 1329 1427
IPR001650 Helicase_C 903 1031
No external refs found!