Cre03.g158150

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SR140 snRNP-associated protein

Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g158150
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
Dac_g01031	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g04985	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09866	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g08483	No alias	snRNP-associated protein *(SR140) & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g07962	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006817	phosphate ion transport	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000061	Surp	348	397
IPR000504	RRM_dom	201	274

External Links

No external refs found!

Cre03.g158150

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation