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  5. LOC_Os12g40900

LOC_Os12g40900 (Os12g0601400)


Aliases : Os12g0601400

Description : 27.3.40 RNA.regulation of transcription.Aux/IAA family SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. SHORT HYPOCOTYL 2 (SHY2)


Gene families : OG_01_0000182 (Gene family) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os12g40900
Cluster HCCA cluster: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT1G15580 ATAUX2-27, AUX2-27, IAA5 indole-3-acetic acid inducible 5 0.02 Gene family
AT4G14550 SLR, IAA14 indole-3-acetic acid inducible 14 0.04 Gene family
AT4G14560 IAA1, AXR5 indole-3-acetic acid inducible 0.04 Gene family
AT4G29080 IAA27, PAP2 phytochrome-associated protein 2 0.02 Gene family
GSVIVT01015350001 No alias 30.11 signalling.light phytochrome-associated protein 2... 0.02 Gene family
GSVIVT01018101001 No alias 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
GSVIVT01021779001 No alias 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.03 Gene family
LOC_Os12g40890 Os12g0601300 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.03 Gene family
Solyc06g008580.3.1 Solyc06g008580.3 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
Zm00001d009532 GRMZM2G573324 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
Zm00001d011588 GRMZM2G163848 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
Zm00001d013071 GRMZM2G152796 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
Zm00001d033319 GRMZM2G366373 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.07 Gene family
Zm00001d033976 GRMZM2G159285 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.05 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 40 193
No external refs found!