LOC_Os12g40900 (Os12g0601400)


Aliases : Os12g0601400

Description : 27.3.40 RNA.regulation of transcription.Aux/IAA family SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. SHORT HYPOCOTYL 2 (SHY2)


Gene families : OG_01_0000182 (Gene family) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os12g40900
Cluster HCCA cluster: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT1G15580 ATAUX2-27, AUX2-27, IAA5 indole-3-acetic acid inducible 5 0.02 Gene family
AT4G14550 SLR, IAA14 indole-3-acetic acid inducible 14 0.04 Gene family
AT4G14560 IAA1, AXR5 indole-3-acetic acid inducible 0.04 Gene family
AT4G29080 IAA27, PAP2 phytochrome-associated protein 2 0.02 Gene family
GSVIVT01015350001 No alias 30.11 signalling.light phytochrome-associated protein 2... 0.02 Gene family
GSVIVT01018101001 No alias 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
GSVIVT01021779001 No alias 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.03 Gene family
LOC_Os12g40890 Os12g0601300 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.03 Gene family
Solyc06g008580.3.1 Solyc06g008580.3 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
Zm00001d009532 GRMZM2G573324 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
Zm00001d011588 GRMZM2G163848 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
Zm00001d013071 GRMZM2G152796 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.02 Gene family
Zm00001d033319 GRMZM2G366373 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.07 Gene family
Zm00001d033976 GRMZM2G159285 27.3.40 RNA.regulation of transcription.Aux/IAA family... 0.05 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 40 193
No external refs found!