Cre02.g091550

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor

Gene families : OG0002379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002379_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre02.g091550

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0290.g063328	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description:...	0.01	OrthoFinder output from all 47 species
GSVIVT01020061001	ATWHY1, WHY1, PTAC1	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
Ppi_g58265	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g29995	No alias	recombination mediator *(Whirly) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc11g044750.3.1	WHY2, ATWHY2,...	recombination mediator (Whirly). Whirly-type plastidial...	0.02	OrthoFinder output from all 47 species
Zm00001e025194_P001	WHY2, ATWHY2,...	recombination mediator (Whirly). Whirly-type plastidial...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013742	Whirly	80	222

External Links

No external refs found!

Cre02.g091550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation