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  5. LOC_Os04g47270.1

LOC_Os04g47270.1


Description : lysine-specific demethylase (LDL/KDM1)


Gene families : OG_01_0001739 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001739_tree ,
OG_02_0001723 (LandPlants) Phylogenetic Tree(s): OG_02_0001723_tree ,
OG_03_0001595 (SeedPlants) Phylogenetic Tree(s): OG_03_0001595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g47270.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00264590 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
AMTR_s00015p00199070 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
AT3G10390 FLD Flavin containing amine oxidoreductase family protein 0.02 Archaeplastida
Cpa|evm.model.tig00001497.8 No alias Lysine-specific histone demethylase 1 homolog 2 OS=Oryza... 0.01 Archaeplastida
Cre07.g318651 No alias Lysine-specific histone demethylase 1 homolog 3 OS=Oryza... 0.02 Archaeplastida
GSVIVT01016218001 No alias Chromatin organisation.histone modifications.histone... 0.08 Archaeplastida
Mp8g11530.1 No alias lysine-specific demethylase (LDL/KDM1) 0.04 Archaeplastida
Smo79938 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Solyc07g063450.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida
Solyc11g008320.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.08 Archaeplastida
Zm00001e007263_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.08 Archaeplastida
Zm00001e015890_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.07 Archaeplastida
Zm00001e040280_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida
AMTR_s00003p00264590 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 LandPlants
AMTR_s00015p00199070 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.02 LandPlants
GSVIVT01016218001 No alias Chromatin organisation.histone modifications.histone... 0.07 LandPlants
Gb_40551 No alias lysine-specific demethylase (LDL/KDM1) 0.02 LandPlants
Mp8g11530.1 No alias lysine-specific demethylase (LDL/KDM1) 0.02 LandPlants
Smo79938 No alias Chromatin organisation.histone modifications.histone... 0.02 LandPlants
Solyc07g063450.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.02 LandPlants
Solyc11g008320.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.07 LandPlants
Zm00001e007263_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.08 LandPlants
Zm00001e015890_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.05 LandPlants
Zm00001e040280_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.03 LandPlants
AMTR_s00003p00264590 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 SeedPlants
GSVIVT01016218001 No alias Chromatin organisation.histone modifications.histone... 0.06 SeedPlants
Gb_40551 No alias lysine-specific demethylase (LDL/KDM1) 0.02 SeedPlants
MA_1921g0010 No alias lysine-specific demethylase (LDL/KDM1) 0.01 SeedPlants
Solyc07g063450.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.02 SeedPlants
Solyc11g008320.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.06 SeedPlants
Zm00001e007263_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.07 SeedPlants
Zm00001e015890_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.05 SeedPlants
Zm00001e040280_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 207 633
IPR007526 SWIRM 103 180
No external refs found!