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  5. Cre02.g089237

Cre02.g089237 (PRT6)


Aliases : PRT6

Description : Protein degradation.N-end rule pathway of targeted proteolysis.N-recognin-mediated ubiquitination.type-I-residues E3 ubiquitin ligase (PRT6)


Gene families : OG0003565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003565_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g089237
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AT5G02310 PRT6 proteolysis 6 0.02 OrthoFinder output from all 47 species
Aev_g08637 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Cba_g16317 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.01 OrthoFinder output from all 47 species
Ceric.29G053500.1 PRT6, Ceric.29G053500 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Ceric.32G041800.1 PRT6, Ceric.32G041800 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g37411 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01034169001 PRT6 Protein degradation.N-end rule pathway of targeted... 0.02 OrthoFinder output from all 47 species
Gb_11947 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.02 OrthoFinder output from all 47 species
Mp7g16320.1 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.03 OrthoFinder output from all 47 species
Ore_g13164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27079 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.01 OrthoFinder output from all 47 species
Smo438209 PRT6 Protein degradation.N-end rule pathway of targeted... 0.02 OrthoFinder output from all 47 species
Tin_g08431 PRT6 type-I-residues E3 ubiquiTin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e016914_P004 PRT6, Zm00001e016914 type-I-residues E3 ubiquitin ligase (PRT6) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR003126 Znf_UBR 36 104
No external refs found!