Description : Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0001693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001693_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cre02.g076600 | |
Cluster | HCCA: Cluster_33 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00062p00164830 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.01 | OrthoFinder output from all 47 species | |
Adi_g024845 | No alias | plastidial RNA splicing factor *(cPTH)) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g04522 | No alias | plastidial RNA splicing factor *(cPTH)) & original... | 0.01 | OrthoFinder output from all 47 species | |
Aop_g13402 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dac_g21478 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dde_g14720 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Nbi_g14677 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Pir_g16567 | No alias | plastidial RNA splicing factor *(cPTH)) & original... | 0.01 | OrthoFinder output from all 47 species | |
Ppi_g59675 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Tin_g14945 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e032320_P002 | Zm00001e032320 | cPTH plastidial RNA splicing factor | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0004665 | prephenate dehydrogenase (NADP+) activity | IEP | HCCA |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | HCCA |
BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006570 | tyrosine metabolic process | IEP | HCCA |
BP | GO:0006571 | tyrosine biosynthetic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
MF | GO:0008977 | prephenate dehydrogenase (NAD+) activity | IEP | HCCA |
BP | GO:0009072 | aromatic amino acid metabolic process | IEP | HCCA |
BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | HCCA |
BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | HCCA |
CC | GO:0031090 | organelle membrane | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001328 | Pept_tRNA_hydro | 89 | 267 |
No external refs found! |