Cre02.g076600


Description : Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001693_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g076600
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00164830 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.01 OrthoFinder output from all 47 species
Adi_g024845 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.02 OrthoFinder output from all 47 species
Aev_g04522 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.01 OrthoFinder output from all 47 species
Aop_g13402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21478 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g14720 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g14677 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g16567 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.01 OrthoFinder output from all 47 species
Ppi_g59675 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g14945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e032320_P002 Zm00001e032320 cPTH plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006570 tyrosine metabolic process IEP HCCA
BP GO:0006571 tyrosine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001328 Pept_tRNA_hydro 89 267
No external refs found!