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  5. Cre01.g062172

Cre01.g062172


Description : Chromatin organisation.histones.H2B-type histone


Gene families : OG0000176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g062172
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00085960 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
AT2G37470 No alias Histone superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G46030 HTB11 Histone superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G22880 HTB2, H2B histone B2 0.01 OrthoFinder output from all 47 species
Adi_g019244 No alias histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g021198 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021863 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27849 HTB4 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g28636 HTB4 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g38274 HTB4 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene17102.t1 HTB4, Aspi01Gene17102 histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17106.t1 HTB4, Aspi01Gene17106 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene27518.t1 HTB4, Aspi01Gene27518 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G007900.1 HTB4, Ceric.03G007900 histone *(H2B) & original description: pacid=50571513... 0.01 OrthoFinder output from all 47 species
Ceric.12G022100.1 HTB4, Ceric.12G022100 histone *(H2B) & original description: pacid=50601168... 0.02 OrthoFinder output from all 47 species
Ceric.12G022200.1 HTB4, Ceric.12G022200 histone *(H2B) & original description: pacid=50601405... 0.03 OrthoFinder output from all 47 species
Ceric.20G039500.1 HTB4, Ceric.20G039500 histone *(H2B) & original description: pacid=50566293... 0.01 OrthoFinder output from all 47 species
Ceric.20G076900.1 HTB4, Ceric.20G076900 histone *(H2B) & original description: pacid=50566872... 0.01 OrthoFinder output from all 47 species
Ceric.24G053000.1 HTB4, Ceric.24G053000 histone *(H2B) & original description: pacid=50628469... 0.01 OrthoFinder output from all 47 species
Ceric.24G053100.1 HTB4, Ceric.24G053100 histone *(H2B) & original description: pacid=50628870... 0.01 OrthoFinder output from all 47 species
Ceric.27G026200.1 Ceric.27G026200 histone *(H2B) & original description: pacid=50606193... 0.01 OrthoFinder output from all 47 species
Ceric.27G029200.1 Ceric.27G029200 histone *(H2B) & original description: pacid=50606171... 0.01 OrthoFinder output from all 47 species
Ceric.29G085900.1 HTB4, Ceric.29G085900 histone *(H2B) & original description: pacid=50624351... 0.01 OrthoFinder output from all 47 species
Cre06.g264800 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre06.g266750 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre06.g273850 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre06.g275800 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Dac_g01811 HTB4 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.01 OrthoFinder output from all 47 species
GSVIVT01025021001 No alias Chromatin organisation.histones.H2B-type histone 0.01 OrthoFinder output from all 47 species
GSVIVT01025025001 No alias Chromatin organisation.histones.H2B-type histone 0.01 OrthoFinder output from all 47 species
Gb_26315 HTB11 histone (H2B) 0.01 OrthoFinder output from all 47 species
LOC_Os01g05630.1 HTB11, LOC_Os01g05630 histone (H2B) 0.01 OrthoFinder output from all 47 species
LOC_Os05g49860.1 HTB11, LOC_Os05g49860 histone (H2B) 0.01 OrthoFinder output from all 47 species
LOC_Os08g38300.1 HTB11, LOC_Os08g38300 histone (H2B) 0.01 OrthoFinder output from all 47 species
Len_g04914 HTB4 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Len_g06996 HTB4 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Len_g13876 HTB4 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g23045 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435143g0010 No alias histone (H2B) 0.01 OrthoFinder output from all 47 species
MA_10435143g0020 HTB11 histone (H2B) 0.01 OrthoFinder output from all 47 species
MA_13454g0010 HTB11 histone (H2B) 0.01 OrthoFinder output from all 47 species
MA_138049g0010 HTB11 histone (H2B) 0.02 OrthoFinder output from all 47 species
MA_8065g0010 HTB11 histone (H2B) 0.03 OrthoFinder output from all 47 species
Mp4g13450.1 HTB11 histone (H2B) 0.02 OrthoFinder output from all 47 species
Mp6g04070.1 No alias histone (H2B) 0.01 OrthoFinder output from all 47 species
Pir_g31996 No alias histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g60087 HTB4 histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Solyc02g038690.1.1 HTB4, Solyc02g038690 histone (H2B) 0.01 OrthoFinder output from all 47 species
Solyc06g074790.2.1 HTB11, Solyc06g074790 histone (H2B) 0.01 OrthoFinder output from all 47 species
Solyc06g075800.1.1 HTB11, Solyc06g075800 histone (H2B) 0.02 OrthoFinder output from all 47 species
Solyc11g007920.1.1 HTB11, Solyc11g007920 histone (H2B) 0.02 OrthoFinder output from all 47 species
Solyc11g007930.1.1 HTB11, Solyc11g007930 histone (H2B) 0.01 OrthoFinder output from all 47 species
Solyc11g066430.2.1 Solyc11g066430 histone (H2B) 0.01 OrthoFinder output from all 47 species
Spa_g01863 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15129 No alias histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g32990 HTB4 histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46015 HTB4 histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50701 No alias histone *(H2B) & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g52508 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05754 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09273 No alias histone *(H2B) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004028_P001 HTB11, Zm00001e004028 histone (H2B) 0.01 OrthoFinder output from all 47 species
Zm00001e016882_P001 HTB2, H2B, Zm00001e016882 histone (H2B) 0.01 OrthoFinder output from all 47 species
Zm00001e020484_P002 HTB1, Zm00001e020484 histone (H2B) 0.01 OrthoFinder output from all 47 species
Zm00001e023342_P001 HTB4, Zm00001e023342 histone (H2B) 0.01 OrthoFinder output from all 47 species
Zm00001e027803_P001 HTB11, Zm00001e027803 histone (H2B) 0.01 OrthoFinder output from all 47 species
Zm00001e041296_P001 HTB11, Zm00001e041296 histone (H2B) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 97
No external refs found!