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  5. Cre01.g040379

Cre01.g040379 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g040379

Target Alias Description ECC score Gene Family Method Actions
Adi_g034550 UPF1, ATUPF1, LBA1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g29734 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Aop_g14327 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.01 OrthoFinder output from all 47 species
Aop_g29541 UPF1, ATUPF1, LBA1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g11492 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.01 OrthoFinder output from all 47 species
Dcu_g20574 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.01 OrthoFinder output from all 47 species
Nbi_g13143 UPF1, ATUPF1, LBA1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g11844 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.01 OrthoFinder output from all 47 species
Sam_g29675 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA

No InterPro domains available for this sequence

No external refs found!