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  5. Cre01.g039300

Cre01.g039300 (PAB8, PABP8)


Aliases : PAB8, PABP8

Description : Protein biosynthesis.translation initiation.mRNA loading.PABP mRNA poly-A-tail binding factor


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g039300
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G49760 PAB8, PABP8 poly(A) binding protein 8 0.05 OrthoFinder output from all 47 species
AT2G23350 PABP4, PAB4 poly(A) binding protein 4 0.03 OrthoFinder output from all 47 species
Adi_g023674 PAB8, PABP8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025026 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Ala_g06987 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Als_g13165 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Als_g32811 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Als_g37611 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Aop_g02222 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Azfi_s0060.g034731 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Ceric.36G019600.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001264.28 PAB8, PABP8 Protein biosynthesis.translation initiation.mRNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01022079001 PAB2, PABP2, ATPAB2 Protein biosynthesis.translation initiation.mRNA... 0.04 OrthoFinder output from all 47 species
Gb_00731 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.02 OrthoFinder output from all 47 species
LOC_Os09g02700.1 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.01 OrthoFinder output from all 47 species
Mp7g18970.1 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.08 OrthoFinder output from all 47 species
Pir_g22689 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.07 OrthoFinder output from all 47 species
Pir_g31326 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g18527 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g01277 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g05877 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g31981 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007972 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023696 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Sam_g10629 No alias mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Sam_g24217 No alias mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Solyc12g088720.2.1 PAB2, PABP2,... mRNA poly-A-tail binding factor (PABP) 0.04 OrthoFinder output from all 47 species
Spa_g26046 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Spa_g41229 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Spa_g56813 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 116 183
IPR000504 RRM_dom 205 273
IPR000504 RRM_dom 308 376
IPR000504 RRM_dom 25 97
IPR002004 PABP_HYD 579 645
No external refs found!