LOC_Os04g45990.1


Description : class V/Su(var) histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG_01_0000257 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000257_tree ,
OG_02_0001628 (LandPlants) Phylogenetic Tree(s): OG_02_0001628_tree ,
OG_03_0001153 (SeedPlants) Phylogenetic Tree(s): OG_03_0001153_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g45990.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00104700 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
GSVIVT01027376001 No alias Histone-lysine N-methyltransferase, H3 lysine-9 specific... 0.03 Archaeplastida
MA_7658g0020 No alias class V/Su(var) histone methyltransferase component of... 0.03 Archaeplastida
Pp3c12_13280V3.1 No alias SU(VAR)3-9 homolog 4 0.02 Archaeplastida
Pp3c2_30835V3.1 No alias SU(VAR)3-9 homolog 6 0.02 Archaeplastida
Solyc09g090810.3.1 No alias class V/Su(var) histone methyltransferase component of... 0.03 Archaeplastida
Solyc10g077070.2.1 No alias class V/Su(var) histone methyltransferase component of... 0.02 Archaeplastida
Zm00001e007370_P001 No alias class V/Su(var) histone methyltransferase component of... 0.04 Archaeplastida
Zm00001e027327_P003 No alias class V/Su(var) histone methyltransferase component of... 0.03 Archaeplastida
Zm00001e031994_P003 No alias class V/Su(var) histone methyltransferase component of... 0.04 Archaeplastida
Zm00001e033130_P002 No alias class V/Su(var) histone methyltransferase component of... 0.02 Archaeplastida
AMTR_s00008p00104700 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 LandPlants
Zm00001e007370_P001 No alias class V/Su(var) histone methyltransferase component of... 0.02 LandPlants
AMTR_s00008p00104700 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0018024 histone-lysine N-methyltransferase activity IEA Interproscan
BP GO:0034968 histone lysine methylation IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007728 Pre-SET_dom 566 662
IPR001214 SET_dom 681 811
IPR003105 SRA_YDG 393 541
No external refs found!